shell 脚本模板
2021/11/16 7:13:28
本文主要是介绍shell 脚本模板,对大家解决编程问题具有一定的参考价值,需要的程序猿们随着小编来一起学习吧!
#!/usr/bin/env bash #this srcipt is to do wheat_bsa #author lee #this is fail test, because bash didn't care about the failure of command #this can prevent the situation that check result of each step, only right can go on set -Eeuo pipefail #display for better use and record log of change Usage(){ cat <<EOF Usage: $0 Input: Gene ID $0 Haplotype $0 Phenotype $0 -h (help) (Display this document) EOF exit 1 } # display help with para -h [ "$1" = "-h" ] && Usage #basename:basename---strip directory and suffix from filenames #dirname:---keep directory only cd `dirname $0` can change the work directory and perform command ### index OUTPUT_DIR=/public/home/caisl/lee/my_rnaseq/rna mkdir -p "$OUTPUT_DIR" LOG_DIR=/public/home/caisl/lee/my_rnaseq/rna mkdir -p "$LOG_DIR" ref_seq=/public/home/caisl/lee/my_rnaseq/Triticum_aestivum.IWGSC.dna.toplevel.fa annotation=/public/home/caisl/lee/my_rnaseq/Triticum_aestivum.IWGSC.51.gtf
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